Detailed information of SNP:
|
SNP ID:
sf0122681091(Gbrowse)
Chromosome: chr01 Position: 22681091 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1172 | 64.51% | 35.49% |
| All Indica | 583 | 32.76% | 67.24% |
| All Japonica | 481 | 99.17% | 0.83% |
| Aus | 58 | 81.03% | 18.97% |
| Indica I | 277 | 9.39% | 90.61% |
| Indica II | 172 | 60.47% | 39.53% |
| Indica Intermediate | 134 | 45.52% | 54.48% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 79 | 96.20% | 3.80% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122681091 | G->A | INTERGENIC | None |