Detailed information of SNP:
|
SNP ID:
sf0122689891(Gbrowse)
Chromosome: chr01 Position: 22689891 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.94% | 40.06% |
| All Indica | 799 | 88.49% | 11.51% |
| All Japonica | 497 | 8.25% | 91.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 68.54% | 31.46% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122689891 | G->A | INTERGENIC | None |