Detailed information of SNP:
|
SNP ID:
sf0122693156(Gbrowse)
Chromosome: chr01 Position: 22693156 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.22% | 44.78% |
| All Indica | 798 | 83.58% | 16.42% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 212 | 63.68% | 36.32% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122693156 | G->A | INTERGENIC | None |