Detailed information of SNP:
|
SNP ID:
sf0122693176(Gbrowse)
Chromosome: chr01 Position: 22693176 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 59.31% | 40.69% |
| All Indica | 799 | 88.11% | 11.89% |
| All Japonica | 496 | 7.46% | 92.54% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 68.08% | 31.92% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122693176 | T->C | INTERGENIC | None |