Detailed information of SNP:
|
SNP ID:
sf0122693209(Gbrowse)
Chromosome: chr01 Position: 22693209 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 90.70% | 9.30% |
| All Indica | 787 | 87.42% | 12.58% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 47 | 51.06% | 48.94% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 205 | 62.44% | 37.56% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 6 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122693209 | C->A | INTERGENIC | None |