Detailed information of SNP:
|
SNP ID:
sf0122695980(Gbrowse)
Chromosome: chr01 Position: 22695980 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 86.66% | 13.34% |
| All Indica | 798 | 89.60% | 10.40% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122695980 | A->G | INTERGENIC | None |