Detailed information of SNP:
|
SNP ID:
sf0122696005(Gbrowse)
Chromosome: chr01 Position: 22696005 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 87.74% | 12.26% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 93.87% | 6.13% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122696005 | G->A | INTERGENIC | None |