Detailed information of SNP:
|
SNP ID:
sf0122724805(Gbrowse)
Chromosome: chr01 Position: 22724805 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 59.08% | 40.92% |
| All Indica | 798 | 87.97% | 12.03% |
| All Japonica | 496 | 7.06% | 92.94% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 66.04% | 33.96% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122724805 | A->G | LOC_Os01g40250(LOC_Os01g40250.1) | Non-Synonymous SNP |