Detailed information of SNP:
|
SNP ID:
sf0122729354(Gbrowse)
Chromosome: chr01 Position: 22729354 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 70.68% | 29.32% |
| All Indica | 797 | 89.21% | 10.79% |
| All Japonica | 494 | 36.84% | 63.16% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 68.87% | 31.13% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 333 | 44.74% | 55.26% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 67 | 20.90% | 79.10% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122729354 | C->A | INTERGENIC | None |