Detailed information of SNP:
|
SNP ID:
sf0122729479(Gbrowse)
Chromosome: chr01 Position: 22729479 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.06% | 9.94% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122729479 | A->T | INTERGENIC | None |