Detailed information of SNP:
|
SNP ID:
sf0122737837(Gbrowse)
Chromosome: chr01 Position: 22737837 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 57.83% | 42.17% |
| All Indica | 798 | 87.72% | 12.28% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122737837 | T->C | INTERGENIC | None |