Detailed information of SNP:
|
SNP ID:
sf0122753109(Gbrowse)
Chromosome: chr01 Position: 22753109 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 98.28% | 1.72% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 480 | 95.42% | 4.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 320 | 96.88% | 3.12% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122753109 | C->T | INTERGENIC | None |