Detailed information of SNP:
|
SNP ID:
sf0122785934(Gbrowse)
Chromosome: chr01 Position: 22785934 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.28% | 10.72% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122785934 | A->T | LOC_Os01g40360(LOC_Os01g40360.1) | INTRON |