Detailed information of SNP:
|
SNP ID:
sf0122788907(Gbrowse)
Chromosome: chr01 Position: 22788907 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 89.19% | 10.81% |
| All Indica | 797 | 91.97% | 8.03% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 9.09% | 90.91% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122788907 | C->T | INTERGENIC | None |