Detailed information of SNP:
|
SNP ID:
sf0122789399(Gbrowse)
Chromosome: chr01 Position: 22789399 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 92.08% | 7.92% |
| All Indica | 787 | 93.27% | 6.73% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 63 | 22.22% | 77.78% |
| Indica I | 374 | 94.92% | 5.08% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 201 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122789399 | G->A | INTERGENIC | None |