Detailed information of SNP:
|
SNP ID:
sf0122789513(Gbrowse)
Chromosome: chr01 Position: 22789513 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 89.43% | 10.57% |
| All Indica | 799 | 90.74% | 9.26% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122789513 | G->A | INTERGENIC | None |