Detailed information of SNP:
|
SNP ID:
sf0122818013(Gbrowse)
Chromosome: chr01 Position: 22818013 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1277 | 94.52% | 5.48% |
| All Indica | 796 | 100.00% | 0.00% |
| All Japonica | 360 | 81.94% | 18.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 236 | 97.46% | 2.54% |
| Tropical Japonica | 80 | 35.00% | 65.00% |
| Japonica Intermediate | 44 | 84.09% | 15.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122818013 | T->C | INTERGENIC | None |