Detailed information of SNP:
|
SNP ID:
sf0122832922(Gbrowse)
Chromosome: chr01 Position: 22832922 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 57.18% | 42.82% |
| All Indica | 786 | 32.57% | 67.43% |
| All Japonica | 491 | 96.54% | 3.46% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 371 | 11.59% | 88.41% |
| Indica II | 210 | 48.57% | 51.43% |
| Indica Intermediate | 205 | 54.15% | 45.85% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122832922 | G->A | INTERGENIC | None |