Detailed information of SNP:
|
SNP ID:
sf0122835043(Gbrowse)
Chromosome: chr01 Position: 22835043 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 93.83% | 6.17% |
| All Indica | 790 | 92.53% | 7.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 369 | 92.41% | 7.59% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 87.02% | 12.98% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122835043 | C->T | LOC_Os01g40450(LOC_Os01g40450.1) | Synonymous |