Detailed information of SNP:
|
SNP ID:
sf0122847526(Gbrowse)
Chromosome: chr01 Position: 22847526 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 60.34% | 39.66% |
| All Indica | 791 | 91.78% | 8.22% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 17.20% | 82.80% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122847526 | A->G | LOC_Os01g40460(LOC_Os01g40460.1) | Non-Synonymous SNP |