Detailed information of SNP:
|
SNP ID:
sf0122864360(Gbrowse)
Chromosome: chr01 Position: 22864360 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.10% | 43.90% |
| All Indica | 799 | 27.03% | 72.97% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 5.07% | 94.93% |
| Indica II | 213 | 44.60% | 55.40% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122864360 | C->T | INTERGENIC | None |