Detailed information of SNP:
|
SNP ID:
sf0122871122(Gbrowse)
Chromosome: chr01 Position: 22871122 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 58.43% | 41.57% |
| All Indica | 798 | 74.94% | 25.06% |
| All Japonica | 497 | 25.35% | 74.65% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 60.09% | 39.91% |
| Indica Intermediate | 210 | 55.24% | 44.76% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122871122 | C->T | INTERGENIC | None |