Detailed information of SNP:



SNP ID: sf0122874509(Gbrowse)

Chromosome: chr01

Position: 22874509
Major allele: C

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1417 73.11% 26.89%
All Indica797 99.37% 0.63%
All Japonica497 25.75% 74.25%
Aus67 97.01% 2.99%
Indica I375 99.73% 0.27%
Indica II212 99.53% 0.47%
Indica Intermediate210 98.57% 1.43%
Temperate Japonica335 3.28% 96.72%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 35.29% 64.71%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0122874509 A->C INTERGENIC None