Detailed information of SNP:
|
SNP ID:
sf0122879069(Gbrowse)
Chromosome: chr01 Position: 22879069 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 65.84% | 34.16% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 493 | 5.88% | 94.12% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 23.66% | 76.34% |
| Japonica Intermediate | 65 | 4.62% | 95.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122879069 | A->G | LOC_Os01g40499(LOC_Os01g40499.2) | UTR_3_PRIME |
| sf0122879069 | A->G | LOC_Os01g40499(LOC_Os01g40499.1) | UTR_3_PRIME |