Detailed information of SNP:
|
SNP ID:
sf0122880696(Gbrowse)
Chromosome: chr01 Position: 22880696 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 85.95% | 14.05% |
| All Indica | 797 | 76.66% | 23.34% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 212 | 62.26% | 37.74% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122880696 | G->A | LOC_Os01g40499(LOC_Os01g40499.2) | Synonymous |
| sf0122880696 | G->A | LOC_Os01g40499(LOC_Os01g40499.1) | Synonymous |