Detailed information of SNP:
|
SNP ID:
sf0122884092(Gbrowse)
Chromosome: chr01 Position: 22884092 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 90.04% | 9.96% |
| All Indica | 797 | 91.34% | 8.66% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122884092 | C->T | LOC_Os01g40499(LOC_Os01g40499.2) | INTRON |
| sf0122884092 | C->T | LOC_Os01g40499(LOC_Os01g40499.1) | INTRON |