Detailed information of SNP:
|
SNP ID:
sf0122887664(Gbrowse)
Chromosome: chr01 Position: 22887664 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 59.62% | 40.38% |
| All Indica | 797 | 76.29% | 23.71% |
| All Japonica | 494 | 26.11% | 73.89% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 62.26% | 37.74% |
| Indica Intermediate | 210 | 56.67% | 43.33% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122887664 | C->T | LOC_Os01g40499(LOC_Os01g40499.1) | INTRON |