Detailed information of SNP:
|
SNP ID:
sf0122958475(Gbrowse)
Chromosome: chr01 Position: 22958475 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.71% | 36.29% |
| All Indica | 799 | 82.23% | 17.77% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 60.66% | 39.34% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122958475 | A->G | INTERGENIC | None |