Detailed information of SNP:
|
SNP ID:
sf0122958501(Gbrowse)
Chromosome: chr01 Position: 22958501 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.75% | 18.25% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 497 | 78.07% | 21.93% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122958501 | G->A | INTERGENIC | None |