Detailed information of SNP:
|
SNP ID:
sf0122964586(Gbrowse)
Chromosome: chr01 Position: 22964586 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 75.95% | 24.05% |
| All Indica | 796 | 72.74% | 27.26% |
| All Japonica | 482 | 77.59% | 22.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 211 | 63.03% | 36.97% |
| Indica Intermediate | 210 | 57.62% | 42.38% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 79 | 2.53% | 97.47% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122964586 | T->G | INTERGENIC | None |