Detailed information of SNP:
|
SNP ID:
sf0122970849(Gbrowse)
Chromosome: chr01 Position: 22970849 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.30% | 37.70% |
| All Indica | 799 | 79.47% | 20.53% |
| All Japonica | 497 | 27.57% | 72.43% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 62.93% | 37.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122970849 | T->C | INTERGENIC | None |