Detailed information of SNP:
|
SNP ID:
sf0122970881(Gbrowse)
Chromosome: chr01 Position: 22970881 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 62.39% | 37.61% |
| All Indica | 797 | 79.42% | 20.58% |
| All Japonica | 497 | 27.77% | 72.23% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 373 | 62.73% | 37.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122970881 | T->G | INTERGENIC | None |