Detailed information of SNP:
|
SNP ID:
sf0122973396(Gbrowse)
Chromosome: chr01 Position: 22973396 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.74% | 49.26% |
| All Indica | 799 | 15.39% | 84.61% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 18.40% | 81.60% |
| Indica II | 213 | 7.98% | 92.02% |
| Indica Intermediate | 211 | 17.54% | 82.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122973396 | G->A | INTERGENIC | None |