Detailed information of SNP:
|
SNP ID:
sf0122973604(Gbrowse)
Chromosome: chr01 Position: 22973604 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1362 | 97.28% | 2.72% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 441 | 92.06% | 7.94% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 91.17% | 8.83% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 84.38% | 15.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122973604 | C->A | INTERGENIC | None |