Detailed information of SNP:
|
SNP ID:
sf0122974157(Gbrowse)
Chromosome: chr01 Position: 22974157 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 68.22% | 31.78% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 497 | 26.56% | 73.44% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122974157 | A->G | INTERGENIC | None |