Detailed information of SNP:
|
SNP ID:
sf0122987787(Gbrowse)
Chromosome: chr01 Position: 22987787 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 91.89% | 8.11% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 496 | 78.63% | 21.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0122987787 | G->C | LOC_Os01g40670(LOC_Os01g40670.2) | INTRON |
| sf0122987787 | G->C | LOC_Os01g40670(LOC_Os01g40670.1) | INTRON |