Detailed information of SNP:
|
SNP ID:
sf0123072088(Gbrowse)
Chromosome: chr01 Position: 23072088 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 89.63% | 10.37% |
| All Indica | 798 | 84.84% | 15.16% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 78.34% | 21.66% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123072088 | C->T | INTERGENIC | None |