Detailed information of SNP:
|
SNP ID:
sf0123085266(Gbrowse)
Chromosome: chr01 Position: 23085266 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.39% | 35.61% |
| All Indica | 799 | 89.99% | 10.01% |
| All Japonica | 496 | 17.74% | 82.26% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 81.87% | 18.13% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123085266 | A->G | LOC_Os01g40830(LOC_Os01g40830.1) | INTRON |