Detailed information of SNP:
|
SNP ID:
sf0123088322(Gbrowse)
Chromosome: chr01 Position: 23088322 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 88.90% | 11.10% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 496 | 73.59% | 26.41% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123088322 | A->C | LOC_Os01g40830(LOC_Os01g40830.1) | Synonymous |