Detailed information of SNP:
|
SNP ID:
sf0123151714(Gbrowse)
Chromosome: chr01 Position: 23151714 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 91.97% | 8.03% |
| All Indica | 798 | 91.10% | 8.90% |
| All Japonica | 487 | 92.81% | 7.19% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 83.20% | 16.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 325 | 98.77% | 1.23% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123151714 | T->G | INTERGENIC | None |