Detailed information of SNP:
|
SNP ID:
sf0123226010(Gbrowse)
Chromosome: chr01 Position: 23226010 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 54.72% | 45.28% |
| All Indica | 798 | 21.30% | 78.70% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 24.60% | 75.40% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 211 | 26.54% | 73.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123226010 | C->A | INTERGENIC | None |