Detailed information of SNP:
|
SNP ID:
sf0123283843(Gbrowse)
Chromosome: chr01 Position: 23283843 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1328 | 79.82% | 20.18% |
| All Indica | 798 | 88.35% | 11.65% |
| All Japonica | 408 | 58.09% | 41.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 249 | 39.76% | 60.24% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 65 | 69.23% | 30.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123283843 | A->G | INTERGENIC | None |