Detailed information of SNP:
|
SNP ID:
sf0123296278(Gbrowse)
Chromosome: chr01 Position: 23296278 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 74.18% | 25.82% |
| All Indica | 795 | 98.87% | 1.13% |
| All Japonica | 495 | 30.30% | 69.70% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 92 | 93.48% | 6.52% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123296278 | A->T | LOC_Os01g41145(LOC_Os01g41145.1) | UTR_3_PRIME |