Detailed information of SNP:
|
SNP ID:
sf0123306186(Gbrowse)
Chromosome: chr01 Position: 23306186 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 60.91% | 39.09% |
| All Indica | 792 | 31.82% | 68.18% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 10.51% | 89.49% |
| Indica II | 212 | 43.87% | 56.13% |
| Indica Intermediate | 209 | 57.42% | 42.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123306186 | G->T | INTERGENIC | None |