Detailed information of SNP:
|
SNP ID:
sf0123308818(Gbrowse)
Chromosome: chr01 Position: 23308818 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1182 | 80.63% | 19.37% |
| All Indica | 576 | 87.15% | 12.85% |
| All Japonica | 491 | 69.86% | 30.14% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 260 | 84.62% | 15.38% |
| Indica II | 150 | 89.33% | 10.67% |
| Indica Intermediate | 166 | 89.16% | 10.84% |
| Temperate Japonica | 333 | 65.17% | 34.83% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 65 | 56.92% | 43.08% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123308818 | C->T | INTERGENIC | None |