Detailed information of SNP:
|
SNP ID:
sf0123334272(Gbrowse)
Chromosome: chr01 Position: 23334272 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 60.75% | 39.25% |
| All Indica | 799 | 31.79% | 68.21% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 12.00% | 88.00% |
| Indica II | 213 | 42.25% | 57.75% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123334272 | A->G | LOC_Os01g41220(LOC_Os01g41220.2) | INTRON |
| sf0123334272 | A->G | LOC_Os01g41220(LOC_Os01g41220.1) | INTRON |