Detailed information of SNP:
|
SNP ID:
sf0123406612(Gbrowse)
Chromosome: chr01 Position: 23406612 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 83.71% | 16.29% |
| All Indica | 795 | 99.12% | 0.88% |
| All Japonica | 494 | 56.07% | 43.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 333 | 48.95% | 51.05% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123406612 | G->A | INTERGENIC | None |