Detailed information of SNP:
|
SNP ID:
sf0123409175(Gbrowse)
Chromosome: chr01 Position: 23409175 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.51% | 21.49% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 56.34% | 43.66% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 49.25% | 50.75% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123409175 | A->T | LOC_Os01g41370(LOC_Os01g41370.1) | INTRON |