Detailed information of SNP:
|
SNP ID:
sf0123425364(Gbrowse)
Chromosome: chr01 Position: 23425364 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 52.08% | 47.92% |
| All Indica | 799 | 23.40% | 76.60% |
| All Japonica | 494 | 92.51% | 7.49% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 2.93% | 97.07% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 333 | 97.00% | 3.00% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123425364 | G->C | INTERGENIC | None |