Detailed information of SNP:
|
SNP ID:
sf0123435027(Gbrowse)
Chromosome: chr01 Position: 23435027 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 79.45% | 20.55% |
| All Indica | 797 | 97.24% | 2.76% |
| All Japonica | 496 | 57.26% | 42.74% |
| Aus | 63 | 34.92% | 65.08% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 334 | 50.60% | 49.40% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0123435027 | T->C | INTERGENIC | None |